Creates Feature Plots based on average gene expression of a list of genes

Creates Feature Plots based on average gene expression of a list of genes

cellMarkerPlots(
  seuratObj,
  geneList = gsl,
  pt.size = 0.3,
  label = FALSE,
  label.size = 3,
  repel = FALSE,
  combine = TRUE
)

Arguments

seuratObj

Seurat Object
geneList

A list of lists containing gene names
pt.size

Size of each point/cell on the UMAP plot. Default is 0.3
label

Whether to have Ident labels on the UMAP plot. Default is FALSE.
label.size

Size of Indent labels on UMAP plot. Default is 3.
repel

Whether to repel Indent labels on UMAP plot. Default is FALSE.
combine

Whether to stitch/combine all the UMAP plots into 1 ggplot object. Default is TRUE.

Value

Feature plot with gene set scores

Author

Kimberle Shen